Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs62054253 chr16:89896932 T/C 0.000207 171 25.87 21.5 36.37 KM Plot
PCPG rs62054257 chr16:89900195 G/A 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62054258 chr16:89900495 C/T 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62054259 chr16:89900500 G/A 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62054571 chr16:90063901 A/C 9.47E-9 173 25.77 20.37 6.62 KM Plot
PCPG rs62054572 chr16:90065941 G/C 9.47E-9 173 25.77 20.37 6.62 KM Plot
PCPG rs62054574 chr16:90067310 A/G 1.07E-8 172 25.77 23.12 6.62 KM Plot
PCPG rs62054580 chr16:90079569 G/C 1.27E-8 173 25.67 20.28 6.62 KM Plot
PCPG rs62054599 chr16:89808850 C/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs62054601 chr16:89811751 C/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs62054604 chr16:89812199 C/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs62054605 chr16:89812201 T/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs62054609 chr16:89816569 C/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs62054610 chr16:89816920 G/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs62054611 chr16:89817017 T/C 0.000179 176 25.87 20.17 36.37 KM Plot